How To Install Trinity Assembler In Ubuntu

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In this guide, we’ll show you how to install Trinity Assembler in Ubuntu. Trinity is a powerful assembler for the GA144 architecture that can be used to develop programs for the Lattice Semiconductor MachXO2 family of FPGAs. The GA144 architecture is based on a 144-pin grid array (GA) package and has 144 I/O pins.

It’s also known as the “Lattice” or “TinyFPGA” architecture.

  • Trinity is a de novo assembler for short read data
  • It uses three algorithms, namely MEGAHIT, Soap Denovo and SPAdes to achieve optimal results
  • To install Trinity in Ubuntu, first add the repository to your system’s sources list: sudo add-apt-repository ppa:sergey-dryabzhinsky/trinityrnaseq 3
  • Update the package index and install Trinity: sudo apt update && sudo apt install trinityrnaseq 4
  • Once Trinity is installed, you can run it by typing “trinity” at the command line

Conda Install Trinity

Conda Install Trinity If you want to use the Trinity de novo assembler on your computer, you will need to install it using Conda. This can be done using the following steps:

1. First, make sure that you have Conda installed on your system. If you don’t, follow the instructions here to install it: https://docs.conda.io/projects/conda/en/latest/user-guide/installation.html 2. Next, open a terminal window and type the following command: `conda install -c bioconda trinity`

3. Once the installation is complete, you should be able to run Trinity by typing `Trinity` at the command line prompt.

How Do I Install Trinity Assembler in Ubuntu

If you’re looking to install Trinity Assembler in Ubuntu, there are a few things you’ll need to do. First, make sure that you have the universe repository enabled in your sources.list file. You can do this by running the following command:

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sudo add-apt-repository universe Next, update your package list so that apt knows about the new repositories that were just added: sudo apt-get update

trinity assembly

Conclusion

Installing Trinity Assembler in Ubuntu is a two-part process. First, you need to install the dependencies required for Trinity. Second, you need to download and install Trinity itself.

The dependencies required for Trinity are the GNU Multiple Precision Arithmetic Library (GMP), MPFR, and MPC. These can be installed using apt-get: sudo apt-get install libgmp3-dev libmpfr-dev libmpc-dev

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